Data Quality Evaluation with inspectEHR

The primary role of inspectEHR is to process the data inside CC-HIC in such a way as to make it ready to produce a data quality report.

First, install and load inspectEHR from github, or download the latest release directly.

# If you need inspectEHR
remotes::install_github("DocEd/inspectEHR")
library(inspectEHR)

## Establish a database connection using DBI
## Details omitted here for security
ctn <- DBI::dbConnect()
output_path <- "where/i/want/to/save"

Supply the perform_evaluation function with an output folder. Please note, you must have write access to both the database and output folder for this to work. You can optionally supply a table with lookups for each contributing site, to conceal the site level identity of any output. The verbose argument is useful to keep track of progress and to debug if there are any issues.

perform_evaluation(connection = ctn,
                   output_folder = output_path,
                   verbose = TRUE)

Edward Palmer

20th September 2019. Updated: 2022-03-24